LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
versioneer.py
bin/kmercoverage
bin/kmerseq
bin/kmersimilarity
bin/kmerspectrum
bin/kmertree
bin/pankmer
bin/refseq-download
bin/refseq-extract
bin/treepath
src/kmerizer/kmerizer.cpp
src/kmerizer/kmerizer.h
src/kmerizer/main.cpp
src/strainge/__init__.py
src/strainge/_version.py
src/strainge/cluster.py
src/strainge/comparison.py
src/strainge/kmertools.py
src/strainge/sample_compare.py
src/strainge/search_tool.py
src/strainge/utils.py
src/strainge/variant_caller.py
src/strainge.egg-info/PKG-INFO
src/strainge.egg-info/SOURCES.txt
src/strainge.egg-info/dependency_links.txt
src/strainge.egg-info/entry_points.txt
src/strainge.egg-info/not-zip-safe
src/strainge.egg-info/requires.txt
src/strainge.egg-info/top_level.txt
src/strainge/cli/__init__.py
src/strainge/cli/kmersets.py
src/strainge/cli/main.py
src/strainge/cli/registry.py
src/strainge/cli/straingr.py
src/strainge/cli/straingst.py
src/strainge/io/__init__.py
src/strainge/io/comparisons.py
src/strainge/io/utils.py
src/strainge/io/variants.py