MANIFEST.in
README.rst
setup.py
ASEkit/.aseCalling.py.swp
ASEkit/.aseQTL.py.swp
ASEkit/__init__.py
ASEkit/aseCalling.py
ASEkit/aseFilter.py
ASEkit/aseQTL.py
ASEkit/aseTrait.py
ASEkit/test.py
ASEkit.egg-info/PKG-INFO
ASEkit.egg-info/SOURCES.txt
ASEkit.egg-info/dependency_links.txt
ASEkit.egg-info/entry_points.txt
ASEkit.egg-info/requires.txt
ASEkit.egg-info/top_level.txt
ASEkit/__pycache__/aseQTL.cpython-35.pyc
ASEkit/aseTrait/ASEassociateTrait.r
ASEkit/example.data/aseCalling/.00.aseCalling.sh.swp
ASEkit/example.data/aseCalling/00.aseCalling.sh
ASEkit/example.data/aseCalling/sample.info.txt
ASEkit/example.data/aseCalling/RNA.test.data/00.sh
ASEkit/example.data/aseCalling/RNA.test.data/ERR188028.Chr22.L.fastq.gz
ASEkit/example.data/aseCalling/RNA.test.data/ERR188028.Chr22.R.fastq.gz
ASEkit/example.data/aseCalling/RNA.test.data/ERR188035.Chr22.L.fastq.gz
ASEkit/example.data/aseCalling/RNA.test.data/ERR188035.Chr22.R.fastq.gz
ASEkit/example.data/aseCalling/RNA.test.data/region.bed
ASEkit/example.data/aseCalling/vcf.test.data/00.sh
ASEkit/example.data/aseCalling/vcf.test.data/HG00123.Chr22.vcf.gz
ASEkit/example.data/aseCalling/vcf.test.data/HG00123.Chr22.vcf.gz.tbi
ASEkit/example.data/aseCalling/vcf.test.data/HG00155.Chr22.vcf.gz
ASEkit/example.data/aseCalling/vcf.test.data/HG00155.Chr22.vcf.gz.tbi
ASEkit/example.data/aseCalling/vcf.test.data/region.bed
ASEkit/example.data/aseFilter/00.aseFilter.sh
ASEkit/example.data/aseFilter/sample.info.txt
ASEkit/example.data/aseFilter/example.data/ERR188028/ERR188028.allelic_counts.txt
ASEkit/example.data/aseFilter/example.data/ERR188028/ERR188028.filter.txt
ASEkit/example.data/aseFilter/example.data/ERR188035/ERR188035.allelic_counts.txt
ASEkit/example.data/aseFilter/example.data/ERR188035/ERR188035.filter.txt
ASEkit/example.data/aseQTL/00.aseQTL.sh
ASEkit/example.data/aseQTL/population.ase.chr.test.txt
ASEkit/example.data/aseQTL/vcf_filepath.txt
ASEkit/example.data/aseQTL/vcf.test.data/GBR.Chr1.vcf.test.gz
ASEkit/example.data/aseQTL/vcf.test.data/GBR.Chr2.vcf.test.gz
ASEkit/example.data/aseTrait/00.aseTrait.sh
ASEkit/example.data/aseTrait/pheno.test.txt
ASEkit/example.data/aseTrait/population.ase.test.txt
ASEkit/src/README.md
ASEkit/src/__init__.py
ASEkit/src/call_read_variant_map.py
ASEkit/src/phaser.py
ASEkit/src/read_variant_map.c
ASEkit/src/read_variant_map.py
ASEkit/src/read_variant_map.so
ASEkit/src/setup.py
ASEkit/src/.git/objects/pack/pack-7b92e54891cf5dbeade2ae710ac163e982fa88f0.idx
ASEkit/src/.git/objects/pack/pack-7b92e54891cf5dbeade2ae710ac163e982fa88f0.pack
ASEkit/src/build/temp.linux-x86_64-2.7/__init__.py
ASEkit/src/build/temp.linux-x86_64-2.7/read_variant_map.o