Metadata-Version: 2.1
Name: dFBApy
Version: 0.0.2
Summary: Simulates dynamic Flux Balance Analysis (dFBA) of a BiGG-formatted XML model and with kinetics data in the format of the BiGG-SABIO module.
Home-page: https://github.com/freiburgermsu/dfbapy
Author: Andrew Freiburger
Author-email: andrewfreiburger@gmail.com
License: MIT
Keywords: chemistry,biology,metabolism,metabolome,flux,balance,analysis,biochemistry,FBA,dynamic
Platform: UNKNOWN
License-File: LICENSE

Dynamic Flux Balance Analysis in Python, with parsed kinetics data
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Reaction kinetics data can be parameterized and simulated in a genome-scale metabolic model (GEM) through dynamic Flux Balance Analysis (FBA). The ``dFBApy`` module supports this method of computational biology through concise and efficient functionality around `COBRApy <https://cobrapy.readthedocs.io/en/latest/>`_ , which is detailed in the following sections. Examples Notebook are available in the examples directory of the `dFBApy GitHub repository <https://github.com/freiburgermsu/dfbapy>`_. Please submit errors, inquiries, or suggestions as `GitHub issues <https://github.com/freiburgermsu/dfbapy/issues>`_ where they can be addressed.


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Installation
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dFBApy is installed in a command prompt, Powershell, Terminal, or Anaconda Command Prompt via ``pip``::

 pip install dfbapy


The full documentation is available on `ReadTheDocs <https://dfbapy.readthedocs.io/en/latest/>`_.

