.appveyor.yml
.dockerignore
.gitignore
.pylintrc
.travis.yml
Dockerfile
LICENSE
MANIFEST.in
Makefile
README.md
requirements.txt
setup.cfg
setup.py
doc/Makefile
doc/conf.py
doc/data_format.rst
doc/environment.yml
doc/index.rst
doc/make.bat
doc/quickstart.rst
doc/requirements.txt
doc/test.rst
doc/api/hicstuff.rst
doc/api/modules.rst
doc/images/pipeline.svg
doc/notebooks/abs_fragments_contacts_weighted.txt
doc/notebooks/demo_api.ipynb
doc/notebooks/demo_cli.ipynb
doc/notebooks/example.cool
doc/notebooks/fragments_list.txt
doc/notebooks/info_contigs.txt
doc/notebooks/example_data/abs_fragments_weighted.txt
doc/notebooks/example_data/example_clean.pairs
doc/notebooks/example_data/fragments_list.txt
doc/notebooks/example_data/info_contigs.txt
hicstuff/__init__.py
hicstuff/commands.py
hicstuff/cutsite.py
hicstuff/digest.py
hicstuff/distance_law.py
hicstuff/filter.py
hicstuff/hicstuff.py
hicstuff/io.py
hicstuff/iteralign.py
hicstuff/log.py
hicstuff/main.py
hicstuff/pipeline.py
hicstuff/version.py
hicstuff/view.py
hicstuff.egg-info/PKG-INFO
hicstuff.egg-info/SOURCES.txt
hicstuff.egg-info/dependency_links.txt
hicstuff.egg-info/entry_points.txt
hicstuff.egg-info/requires.txt
hicstuff.egg-info/top_level.txt