.coveragerc
.flake8
.readthedocs.yml
.travis.yml
AUTHORS.rst
LICENSE
MANIFEST.in
README.rst
doc8.ini
setup.cfg
setup.py
tox.ini
docs/Makefile
docs/source/cli.rst
docs/source/conf.py
docs/source/constants.rst
docs/source/diffusion.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/intro.rst
docs/source/kernels.rst
docs/source/matrix.rst
docs/source/meta/diffupy_logo.png
examples/README.rst
examples/datasets/node.csv
examples/datasets/node_logfc.csv
examples/datasets/node_logfc_pval.csv
examples/datasets/node_type.csv
examples/datasets/sample_dataset.csv
examples/datasets/sample_dataset_with_logfc.csv
examples/datasets/sample_dataset_with_logfc_and_p_value.csv
examples/networks/sample_network.csv
examples/networks/sample_network_2.csv
examples/scripts/example.sh
examples/scripts/example2.sh
src/diffupy/__init__.py
src/diffupy/__main__.py
src/diffupy/cli.py
src/diffupy/constants.py
src/diffupy/diffuse.py
src/diffupy/diffuse_raw.py
src/diffupy/kernels.py
src/diffupy/matrix.py
src/diffupy/process_input.py
src/diffupy/process_network.py
src/diffupy/utils.py
src/diffupy/validate_input.py
src/diffupy.egg-info/PKG-INFO
src/diffupy.egg-info/SOURCES.txt
src/diffupy.egg-info/dependency_links.txt
src/diffupy.egg-info/entry_points.txt
src/diffupy.egg-info/not-zip-safe
src/diffupy.egg-info/requires.txt
src/diffupy.egg-info/top_level.txt
tests/__init__.py
tests/constants.py
tests/test_diffusion.py
tests/test_input.py
tests/test_kernel.py
tests/resources/_graph.gml
tests/resources/commuteTimeKernel.csv
tests/resources/diffusionKernel.csv
tests/resources/input_scores.csv
tests/resources/inverseCosineKernel.csv
tests/resources/output_scores.csv
tests/resources/output_z_scores.csv
tests/resources/pStepKernel.csv
tests/resources/regularisedLaplacianKernel.csv
tests/resources/datasets/node_logfc.csv
tests/resources/datasets/node_logfc_pval.csv
tests/resources/datasets/node_type_col.csv
tests/resources/networks/network_1.csv