Metadata-Version: 2.1
Name: mycotools
Version: 0.9b29
Summary: A compilation of bioinformatic and computation biology inspired python tools
Home-page: https://gitlab.com/xonq/mycotools/mycotools
Author: xonq
Author-email: konkelzach@protonmail.com
License: UNKNOWN
Description: ![mycotools](https://gitlab.com/xonq/mycotools/-/raw/master/mycotools.png)
        
        # PURPOSE
        Bring the power of broadscale genomic analyses to the masses. Mycotools is a compilation of computational biology tools and database (MycotoolsDB) software designed to increase throughput analyzing fungal genomic data (JGI, NCBI, and user-inputted). MycotoolsDB is a database schema with uniform file curation, scalability, and automation as guiding principles. Installation is as simple as `updateDB.py --init <DIR>`. Updates assimilate the most recent JGI & NCBI locally via `updateDB.py -u`. Scalability enables seamless hassle-free transitions from analyses with datasets of 1000s of fungi to as few as 1 or 2 simply by inputting a full database `.db` file or an extracted `.db` obtained via `extractDB.py`. 
        
        Mycotools is currently available as a subset of the full suite, excluding the database assimilation tools. MycotoolsDB is not available outside of the Ohio Supercomputer Center until we publish a manuscript using the tools (expected summer 2022). If you are interested in early access, please email `konkelzach@protonmail.com`.
        
        By integrating with the curated MycotoolsDB, Mycotools aids routine-complex tasks like retrieving `gff` or `fasta` accessions; running and compiling `fasta`s of MycotoolsDB BLAST/hmmsearches; biology-based database manipulation tools; automated phylogenetic analysis pipelines from blast to Pfam extraction to tree prediction, etc etc. Mycotools includes sets of utilities that also enable easy acquisition of batches of sequence data using `ncbiDwnld.py` and `jgiDwnld.py`.
        
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        # USAGE
        Check out [README.md](https://gitlab.com/xonq/mycotools/-/tree/master/mycotools) for install and the [USAGE.md](https://gitlab.com/xonq/mycotools/-/blob/master/mycotools/USAGE.md) for a guide. 
        
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        # CITING
        If Mycotools contribute to your analysis, please cite this git repository (gitlab.com/xonq/mycotools) and mention the Mycotools version in line.
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)
Classifier: Operating System :: POSIX :: Linux
Requires-Python: >=3.0,<4
Description-Content-Type: text/markdown
